matlab-based script 3dmorph Search Results


matlab-based script 3dmorph  (MathWorks Inc)
90
MathWorks Inc matlab-based script 3dmorph
Matlab Based Script 3dmorph, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab-based script 3dmorph/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab-based script 3dmorph - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
3dmorph automatic analysis software  (MathWorks Inc)
90
MathWorks Inc 3dmorph automatic analysis software
Quantitative analysis of microglial-cell morphology in the rostral ventrolateral region of the medulla. (A,D) Axioscan images of whole brainstem (AxioScan.Z1scanner, Carl Zeiss, Zaventem, Belgium) showing targeted areas from the rostral ventrolateral region of the medulla (white boxes) in one control (left) and one LPS-injected (right) lamb. Scale bar: 1000 μm. (B,E) Example of a 3D confocal image stack with full-cell segmentation automatically generated by <t>3DMorph</t> MATLAB-based script showing how quantitative morphological analysis of microglial cells (Iba1-positive cells, green) is performed. The full-cell segmentation shows remaining microglial cells after exclusion of partial cells and small processes not related to a cell body. Scale bar: 35 μm. (C,F) High magnification of the same medullary areas allows for appreciation of the morphological changes of the activated microglial cells in the LPS-injected lamb compared to the resting state in the control lamb. Qualitative analysis thus reveals a higher number of microglial cells with a larger cell-body surface, a larger total territory occupied by microglial cells, and shorter branch length in the LPS-injected lamb. Meanwhile, qualitative assessment of astrogliosis (GFAP-positive cells, red) does not suggest differences between the LPS-injected and the control lamb over the same medullary regions. Scale bar: 10 μm. (G) 3DMorph quantitative analysis of microglial-cell morphology from the above images (C,F) shows an increased average cell volume and territorial volume, as well as smaller branch length in the LPS-injected compared to the control lamb.
3dmorph Automatic Analysis Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/3dmorph automatic analysis software/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
3dmorph automatic analysis software - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
imagej  (MathWorks Inc)
90
MathWorks Inc imagej
Quantitative analysis of microglial-cell morphology in the rostral ventrolateral region of the medulla. (A,D) Axioscan images of whole brainstem (AxioScan.Z1scanner, Carl Zeiss, Zaventem, Belgium) showing targeted areas from the rostral ventrolateral region of the medulla (white boxes) in one control (left) and one LPS-injected (right) lamb. Scale bar: 1000 μm. (B,E) Example of a 3D confocal image stack with full-cell segmentation automatically generated by <t>3DMorph</t> MATLAB-based script showing how quantitative morphological analysis of microglial cells (Iba1-positive cells, green) is performed. The full-cell segmentation shows remaining microglial cells after exclusion of partial cells and small processes not related to a cell body. Scale bar: 35 μm. (C,F) High magnification of the same medullary areas allows for appreciation of the morphological changes of the activated microglial cells in the LPS-injected lamb compared to the resting state in the control lamb. Qualitative analysis thus reveals a higher number of microglial cells with a larger cell-body surface, a larger total territory occupied by microglial cells, and shorter branch length in the LPS-injected lamb. Meanwhile, qualitative assessment of astrogliosis (GFAP-positive cells, red) does not suggest differences between the LPS-injected and the control lamb over the same medullary regions. Scale bar: 10 μm. (G) 3DMorph quantitative analysis of microglial-cell morphology from the above images (C,F) shows an increased average cell volume and territorial volume, as well as smaller branch length in the LPS-injected compared to the control lamb.
Imagej, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/imagej/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
imagej - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier

Image Search Results


Quantitative analysis of microglial-cell morphology in the rostral ventrolateral region of the medulla. (A,D) Axioscan images of whole brainstem (AxioScan.Z1scanner, Carl Zeiss, Zaventem, Belgium) showing targeted areas from the rostral ventrolateral region of the medulla (white boxes) in one control (left) and one LPS-injected (right) lamb. Scale bar: 1000 μm. (B,E) Example of a 3D confocal image stack with full-cell segmentation automatically generated by 3DMorph MATLAB-based script showing how quantitative morphological analysis of microglial cells (Iba1-positive cells, green) is performed. The full-cell segmentation shows remaining microglial cells after exclusion of partial cells and small processes not related to a cell body. Scale bar: 35 μm. (C,F) High magnification of the same medullary areas allows for appreciation of the morphological changes of the activated microglial cells in the LPS-injected lamb compared to the resting state in the control lamb. Qualitative analysis thus reveals a higher number of microglial cells with a larger cell-body surface, a larger total territory occupied by microglial cells, and shorter branch length in the LPS-injected lamb. Meanwhile, qualitative assessment of astrogliosis (GFAP-positive cells, red) does not suggest differences between the LPS-injected and the control lamb over the same medullary regions. Scale bar: 10 μm. (G) 3DMorph quantitative analysis of microglial-cell morphology from the above images (C,F) shows an increased average cell volume and territorial volume, as well as smaller branch length in the LPS-injected compared to the control lamb.

Journal: Frontiers in Physiology

Article Title: Cardiorespiratory Alterations in a Newborn Ovine Model of Systemic Inflammation Induced by Lipopolysaccharide Injection

doi: 10.3389/fphys.2020.00585

Figure Lengend Snippet: Quantitative analysis of microglial-cell morphology in the rostral ventrolateral region of the medulla. (A,D) Axioscan images of whole brainstem (AxioScan.Z1scanner, Carl Zeiss, Zaventem, Belgium) showing targeted areas from the rostral ventrolateral region of the medulla (white boxes) in one control (left) and one LPS-injected (right) lamb. Scale bar: 1000 μm. (B,E) Example of a 3D confocal image stack with full-cell segmentation automatically generated by 3DMorph MATLAB-based script showing how quantitative morphological analysis of microglial cells (Iba1-positive cells, green) is performed. The full-cell segmentation shows remaining microglial cells after exclusion of partial cells and small processes not related to a cell body. Scale bar: 35 μm. (C,F) High magnification of the same medullary areas allows for appreciation of the morphological changes of the activated microglial cells in the LPS-injected lamb compared to the resting state in the control lamb. Qualitative analysis thus reveals a higher number of microglial cells with a larger cell-body surface, a larger total territory occupied by microglial cells, and shorter branch length in the LPS-injected lamb. Meanwhile, qualitative assessment of astrogliosis (GFAP-positive cells, red) does not suggest differences between the LPS-injected and the control lamb over the same medullary regions. Scale bar: 10 μm. (G) 3DMorph quantitative analysis of microglial-cell morphology from the above images (C,F) shows an increased average cell volume and territorial volume, as well as smaller branch length in the LPS-injected compared to the control lamb.

Article Snippet: Following qualitative assessment of the number and morphology of microglial cells, a quantitative 3D-morphological analysis of microglial cells using the 3DMorph Automatic Analysis Software, a MATLAB-based script (MathWorks, Natick, MA, United States) was performed.

Techniques: Injection, Generated